Here you go, a new patcher. There's still a few minor bugs in the Addon Manager (don't click too fast), but otherwise much improved from 3.9. Enjoy.

Change Log Summary (v3.9.1-v3.9.6):

3.9.6
--Fixed a problem with check boxes not being updated correctly when they were hiding.
-- Fixed it so that all code using Progress text now use the nth item update.
-- Made the nth item disable when hide progress text is enabled.

3.9.5
-- Fixed the bug with the nth update not working. The global value was not being updated.
-- Fixed the bug where parent items in the install window didn't have their install box set if any of their children did.
-- Fixed a problem where items that were hidden in the install window didn't update their install or never update when the parents was clicked.
-- Added new option to change behavior of parent install button in relation to a never update item. You can now tell it to check or leave the never update item alone.

3.9.4
-- Fixed the code so that the Hide Progress text option now works again.
-- Fixed a nil object bug.

3.9.3
-- Fixed unhandled exeptions when clicking check all/ uncheck all. The buttons were converting the cell tag to the wrong type.
-- Fixed a bug where files that should be installed were not being installed because they were not flagged.
-- Fixed the Addon Install box so that it will be checked if any file in it is marked for install. If it's changed but all files are NU then it won't have the check mark but show as being changed. The user can go from there.

3.9.2
-- Fixed a bug where the nopatch file was getting cleared when using the install window.
-- Fixed the bug where the Addon install check was being set even if no files were to be installed such as changed set at never update.
-- Fixed a problem where the above bug would cause a never updated file that was not checked to be installed anyways.
-- Fixed a bug where AllInOnInventory would cause an exception because the AllInOneInventoryKhaos toc overwrote AIOI's. The exception would manifest when you disabled dependent addons. Do Addons in Addons even work?

3.9.1
-- Fixed thottbot uploading after autopatch.
-- Fixed thottbot uploading where it wasn't uploading data.
-- Fixed the never update being ignored when using consolidated file.
-- Fixed problem with files being continually increased when you patched multiple times.